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All packages in 'cola-recount2' (JSON format)All packages 'cola-recount2' (NDJSON stream)BioCartaImagebsubCePacirclizecolacolorRamp2ComplexHeatmapEnrichedHeatmapGetoptLongGlobalOptionsgtrellisHilbertCurveInteractiveComplexHeatmappkgndeprGREATsfcurvesimonasimplifyEnrichmentspiralizeYAPSA

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BioCartaImage::BC2ENTREZ (data.frame)BioCartaImage::BIOCARTA_PATHWAYS (list)BioCartaImage::PATHWAY2BC (data.frame)BioCartaImage::PATHWAY2ENTREZ (data.frame)BioCartaImage::PATHWAY2MSIGDB (data.frame)CePa::PID.db (list)CePa::gene.list (list)cola::cola_rl (ConsensusPartitionList)cola::golub_cola (ConsensusPartitionList)cola::golub_cola_ds (DownSamplingConsensusPartition)cola::golub_cola_rh (HierarchicalPartition)InteractiveComplexHeatmap::rand_mat (matrix)YAPSA::AlexCosmicArtif_sigInd_df (data.frame)YAPSA::AlexCosmicArtif_sig_df (data.frame)YAPSA::AlexCosmicValid_sigInd_df (data.frame)YAPSA::AlexCosmicValid_sig_df (data.frame)YAPSA::AlexCosmicValid_sig_df (data.frame)YAPSA::AlexInitialArtif_sigInd_df (data.frame)YAPSA::AlexInitialArtif_sig_df (data.frame)YAPSA::AlexInitialValid_sigInd_df (data.frame)YAPSA::AlexInitialValid_sig_df (data.frame)YAPSA::COSMIC_subgroups_df (data.frame)YAPSA::GenomeOfNl_raw (data.frame)YAPSA::MutCat_indel_df (data.frame)YAPSA::PCAWG_SP_ID_sigInd_df (data.frame)YAPSA::PCAWG_SP_ID_sigs_df (data.frame)YAPSA::PCAWG_SP_SBS_sigInd_Artif_df (data.frame)YAPSA::PCAWG_SP_SBS_sigInd_Real_df (data.frame)YAPSA::PCAWG_SP_SBS_sigs_Artif_df (data.frame)YAPSA::PCAWG_SP_SBS_sigs_Real_df (data.frame)YAPSA::chosen_signatures_indices_df (data.frame)YAPSA::cutoffCosmicArtif_abs_df (data.frame)YAPSA::cutoffCosmicArtif_rel_df (data.frame)YAPSA::cutoffCosmicValid_abs_df (data.frame)YAPSA::cutoffCosmicValid_rel_df (data.frame)YAPSA::cutoffInitialArtif_abs_df (data.frame)YAPSA::cutoffInitialArtif_rel_df (data.frame)YAPSA::cutoffInitialValid_abs_df (data.frame)YAPSA::cutoffInitialValid_rel_df (data.frame)YAPSA::cutoffPCAWG_ID_WGS_Pid_df (data.frame)YAPSA::cutoffPCAWG_SBS_WGSWES_artifPid_df (data.frame)YAPSA::cutoffPCAWG_SBS_WGSWES_realPid_df (data.frame)YAPSA::exchange_colour_vector (character)YAPSA::exome_mutCatRaw_df (data.frame)YAPSA::lymphomaNature2013_mutCat_df (data.frame)YAPSA::lymphoma_Nature2013_COSMIC_cutoff_exposures_df (data.frame)YAPSA::lymphoma_Nature2013_raw_df (data.frame)YAPSA::lymphoma_PID_df (data.frame)YAPSA::lymphoma_test_df (data.frame)YAPSA::rel_lymphoma_Nature2013_COSMIC_cutoff_exposures_df (data.frame)YAPSA::targetCapture_cor_factors (list)

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